Mingyu Derek Ma 🧬
Mingyu Derek Ma

Senior Machine Learning Scientist

I am a Senior Machine Learning Scientist on the Foundation Models team at Prescient Design, Genentech/Roche, where I work on LLM agents and post-training for molecular and scientific discovery.

I earned my PhD in Computer Science from UCLA, advised by Prof. Wei Wang. I’m a recipient of the J.P. Morgan Chase AI PhD Fellowship and the Amazon Fellowship. I’ve conducted research at Amazon AGI, USC, CUHK, UC Santa Cruz and MIT. I hold a bachelor’s degree in Computing from The Hong Kong Polytechnic University and studied at the University of Maryland.

I develop machine learning (ML) systems inspired by scientific data and expert tasks, equipping large language models (LLMs) with the intuition and knowledge of domain experts. My research introduces machine learning innovations and insights to enable a comprehensive spectrum of expertise acquisition, from explicit to implicit knowledge and from individual decision-making to the automation of complex expert workflows. Specifically, I focus on:

Recent News
Publications

MuirBench: A Comprehensive Benchmark for Robust Multi-image Understanding

ICLR, 2025

MetaScientist: A Human-AI Synergistic Framework for Automated Mechanical Metamaterial Design

NAACL Demonstrations, 2024
Curriculum Vitae

Experience

  1. Prescient Design, Genentech/Roche

    Senior Machine Learning Scientist
    Since 2024; New York, NY
  2. Amazon Alexa AI

    Applied Scientist Intern with Jiun-Yu Kao, Arpit Gupta, Yu-Hsiang Lin, Wenbo Zhao, Kai-Wei Chang, Nanyun Peng and Tagyoung Chung
    2022; Sunnyvale, CA
  3. Amazon Alexa AI

    Applied Scientist Intern with Jiun-Yu Kao, Shuyang Gao, Arpit Gupta, Di Jin, Nanyun Peng and Tagyoung Chung
    2021; Remote
More
  1. UCLA Computer Science Department

    Graduate Student Researcher / Teaching Assistant with Prof. Wei Wang and Prof. Nanyun Peng
    2020 - 2024; Los Angeles, CA
  2. The Chinese University of Hong Kong

    Research Assistant with Prof. Helen Meng
    2018 - 2019; Hong Kong

Education

  1. University of California, Los Angeles

    Doctor of Philosophy in Computer Science
    2020 - 2025; Los Angeles, CA
    Advised by Prof. Wei Wang
  2. The Hong Kong Polytechnic University

    Bachelor of Science in Computing (First Class Honours)
    2014 - 2018; Hong Kong
    Best Thesis Award, commencement speaker, advised by Prof. Qin Lu and Prof. Jiannong Cao
  3. University of Maryland, College Park

    Exchange Student
    2016; College Park, MD

Awards

  • J.P. Morgan PhD Fellowship , 2024
  • Amazon Fellowship , 2024
  • Top 15 Most Influential NAACL Paper (by Paper Digest) , 2024
  • Best Thesis Award, PolyU Dept. of Computing , 2018
  • Silver Award - Hong Kong ICT (Information and Communication Technologies) Awards (website | wiki) Student Innovation Award (Tertiary or Above), Hong Kong Government , 2018
  • HKSAR Government Scholarship Fund Talent Development Scholarship , 2018
  • CMA (The Chinese Manufacturers’ Association of Hong Kong) & Donors Scholarship (3/100) , 2018
  • Champion and Most Innovative Award of the Region - Imagine Cup (website | wiki), Microsoft , 2017
  • Commercial Radio 50th Anniversary Scholarship, Hong Kong Commercial Broadcasting Company Limited & PolyU (1/400) , 2017
  • Best Service Project - Youth Volunteer Service Conference (website) , 2017
  • Wong Tit-Shing Scholarship , 2016
  • Teaching

  • Teaching Associate, Bridge2AI ENABLE Scholar Program, a NIH-Funded program for health practitioner on AI and machine learning (Winter and Spring 2024)
  • Teaching Assistant, Data Science for ALL, an ICS NSF-Funded summer program for high-school students on data science and machine learning (Summer 2023), UC Irvine & UCLA
  • Teaching Associate, CS32 Introduction to Computer Science II (Summer 2023) with Prof. Edwin Ambrosio, UCLA
  • Teaching Assistant, CS35L Software Construction (Spring 2023) with Prof. Paul Eggert, UCLA
  • Teaching Assistant, CS188 Natural Language Processing (Winter 2022, later became CS162) with Prof. Nanyun (Violet) Peng, UCLA
  • Teaching Assistant, CS31 Introduction to Computer Science I (Fall 2021) with Prof. David Smallberg, UCLA
  • Services

    Lead Organizer Organizer: Area Chair:
    • ACL (2025)
    Reviewer:
    • ACL Rolling Review (2025, 2024, 2023, 2022, 2021), NeurIPS (2024), ICLR (2025), ACL (2024, 2023, 2022), EMNLP (2024, 2023, 2022, 2021, 2019), NAACL (2025, 2024, 2022), COLM (2024), AISTATS (2025), KDD (2023), TheWebConf (2024), EACL (2023), NLPCC (2023, 2022)
    • IEEE/ACM Transactions on Audio, Speech, and Language Processing (since 2023)
    • NeurIPS workshop on Efficient Natural Language and Speech Processing (2024)
    • AAAI Spring Symposium on Clinical Foundation Models (2024)
    • EMNLP workshop on Deep Learning for Low-resources NLP workshop (2019)
    • SoCal NLP Symposium (2023, 2022)
    Handbook: ACL 2020 Volunteer: ACL 2023, SoCal NLP Symposium 2019